SNP Detail For rs1240773
1.Mapping Information
Human SNP ID rs1240773
Human chromosome chr11
Human SNP position 116649810
Pig chromosome chr9
Pig SNP position 49128366
2.Annotation Information
PubMed ID21160409
JournalAIDS
Linkwww.ncbi.nlm.nih.gov/pubmed/21160409
StudyCommon human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.
Disease/TraitHIV-1 susceptibility
Initial sample531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls
Replication sampleNA
Region11q23.3
Chromosome idchr11
Chromosome position116649810
Reported geneBUD13
Mapped geneLOC101929011
Upstream gene id
Downstream gene id
SNP gene ids101929011
Upstream gene distance
Downstream gene distance
SNP risk allelers1240773-?
SNPsrs1240773
Merged0
SNP id current1240773
Contextintron_variant
Intergenic0
Allele frequency0.12
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta
%95 Ci
PlatformIllumina [~ 800000]
CNVN
Mapped traitHIV-1 infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180
Study accessionGCST000918