Human SNP ID | rs12402265 |
---|---|
Human chromosome | chr1 |
Human SNP position | 59224930 |
Pig chromosome | chr6 |
Pig SNP position | 140734863 |
PubMed ID | 25420145 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25420145 |
Study | Common variation in PHACTR1 is associated with susceptibility to cervical artery dissection. |
Disease/Trait | Cervical artery dissection |
Initial sample | 1,393 European ancestry cases, 14,416 European ancestry controls |
Replication sample | 659 European ancestry cases, 2,648 European ancestry controls |
Region | 1p32.1 |
Chromosome id | chr1 |
Chromosome position | 59224930 |
Reported gene | FGGY |
Mapped gene | LOC105378754 - LOC105378756 |
Upstream gene id | 105378754 |
Downstream gene id | 105378756 |
SNP gene ids | |
Upstream gene distance | 23495 |
Downstream gene distance | 64351 |
SNP risk allele | rs12402265-A |
SNPs | rs12402265 |
Merged | 0 |
SNP id current | 12402265 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.27 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 1.23 |
%95 Ci | [1.14-1.33] |
Platform | Illumina [472862] |
CNV | N |
Mapped trait | cervical artery dissection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1000059 |
Study accession | GCST002700 |