SNP Detail For rs12402265
1.Mapping Information
Human SNP ID rs12402265
Human chromosome chr1
Human SNP position 59224930
Pig chromosome chr6
Pig SNP position 140734863
2.Annotation Information
PubMed ID25420145
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25420145
StudyCommon variation in PHACTR1 is associated with susceptibility to cervical artery dissection.
Disease/TraitCervical artery dissection
Initial sample1,393 European ancestry cases, 14,416 European ancestry controls
Replication sample659 European ancestry cases, 2,648 European ancestry controls
Region1p32.1
Chromosome idchr1
Chromosome position59224930
Reported geneFGGY
Mapped geneLOC105378754 - LOC105378756
Upstream gene id105378754
Downstream gene id105378756
SNP gene ids
Upstream gene distance23495
Downstream gene distance64351
SNP risk allelers12402265-A
SNPsrs12402265
Merged0
SNP id current12402265
Contextintron_variant
Intergenic1
Allele frequency0.27
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.23
%95 Ci[1.14-1.33]
PlatformIllumina [472862]
CNVN
Mapped traitcervical artery dissection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1000059
Study accessionGCST002700