Human SNP ID | rs12386026 |
---|---|
Human chromosome | chr16 |
Human SNP position | 82783986 |
Pig chromosome | chr6 |
Pig SNP position | 6209960 |
PubMed ID | 20694014 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20694014 |
Study | Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2. |
Disease/Trait | Tuberculosis |
Initial sample | 2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls |
Replication sample | 1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls |
Region | 16q23.3 |
Chromosome id | chr16 |
Chromosome position | 82783986 |
Reported gene | NR |
Mapped gene | LOC101928446, CDH13 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928446, 1012 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12386026-? |
SNPs | rs12386026 |
Merged | 0 |
SNP id current | 12386026 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.04 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.66 |
%95 Ci | [1.30-2.00] |
Platform | Affymetrix [> 333754] (imputed) |
CNV | N |
Mapped trait | Tuberculosis |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_3389 |
Study accession | GCST000764 |