SNP Detail For rs12386026
1.Mapping Information
Human SNP ID rs12386026
Human chromosome chr16
Human SNP position 82783986
Pig chromosome chr6
Pig SNP position 6209960
2.Annotation Information
PubMed ID20694014
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20694014
StudyGenome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.
Disease/TraitTuberculosis
Initial sample2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls
Replication sample1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls
Region16q23.3
Chromosome idchr16
Chromosome position82783986
Reported geneNR
Mapped geneLOC101928446, CDH13
Upstream gene id
Downstream gene id
SNP gene ids101928446, 1012
Upstream gene distance
Downstream gene distance
SNP risk allelers12386026-?
SNPsrs12386026
Merged0
SNP id current12386026
Contextintron_variant
Intergenic0
Allele frequency0.04
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.66
%95 Ci[1.30-2.00]
PlatformAffymetrix [> 333754] (imputed)
CNVN
Mapped traitTuberculosis
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_3389
Study accessionGCST000764