SNP Detail For rs12380424
1.Mapping Information
Human SNP ID rs12380424
Human chromosome chr9
Human SNP position 128640942
Pig chromosome chr1
Pig SNP position 303037638
2.Annotation Information
PubMed ID24144296
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24144296
StudyNine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.
Disease/TraitAxial length
Initial sample12,531 European ancestry individuals
Replication sample8,216 Asian ancestry individuals
Region9q34.11
Chromosome idchr9
Chromosome position128640942
Reported genePKN3, SET, WDR34, ZDHHC12, ZER1, SPTAN1, GLE1
Mapped geneWDR34
Upstream gene id
Downstream gene id
SNP gene ids89891
Upstream gene distance
Downstream gene distance
SNP risk allelers12380424-T
SNPsrs12380424
Merged0
SNP id current12380424
Contextsplice_region_variant
Intergenic0
Allele frequency0.0282
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.2822
%95 Ci[0.16-0.4] unit increase
PlatformIllumina [2500000] (imputed)
CNVN
Mapped traitaxial length measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005318
Study accessionGCST002115