Human SNP ID | rs12364177 |
---|---|
Human chromosome | chr11 |
Human SNP position | 22877431 |
Pig chromosome | chr2 |
Pig SNP position | 39975188 |
PubMed ID | 25646338 |
---|---|
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/25646338 |
Study | Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Trans fatty acid levels |
Initial sample | 8,013 European ancestry individuals |
Replication sample | 1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals |
Region | 11p14.3 |
Chromosome id | chr11 |
Chromosome position | 22877431 |
Reported gene | NR |
Mapped gene | LOC105376590 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376590 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12364177-A |
SNPs | rs12364177 |
Merged | 0 |
SNP id current | 12364177 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.9552 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (Total trans-18:1, EA) |
Or beta | 0.176 |
%95 Ci | [0.1-0.25] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | total trans-18:1 fatty acid measurement, trans fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006823, http://www.ebi.ac.uk/efo/EFO_0006821 |
Study accession | GCST002721 |