SNP Detail For rs12364177
1.Mapping Information
Human SNP ID rs12364177
Human chromosome chr11
Human SNP position 22877431
Pig chromosome chr2
Pig SNP position 39975188
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region11p14.3
Chromosome idchr11
Chromosome position22877431
Reported geneNR
Mapped geneLOC105376590
Upstream gene id
Downstream gene id
SNP gene ids105376590
Upstream gene distance
Downstream gene distance
SNP risk allelers12364177-A
SNPsrs12364177
Merged0
SNP id current12364177
Contextintron_variant
Intergenic0
Allele frequency0.9552
P value0.000001
Pvalue mlog6
P value text(Total trans-18:1, EA)
Or beta0.176
%95 Ci[0.1-0.25] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittotal trans-18:1 fatty acid measurement, trans fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006823, http://www.ebi.ac.uk/efo/EFO_0006821
Study accessionGCST002721