SNP Detail For rs12352279
1.Mapping Information
Human SNP ID rs12352279
Human chromosome chr9
Human SNP position 678837
Pig chromosome chr1
Pig SNP position 247332472
2.Annotation Information
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine - clinic-based
Initial sample5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls
Replication sampleNA
Region9p24.3
Chromosome idchr9
Chromosome position678837
Reported geneintergenic
Mapped geneKANK1
Upstream gene id
Downstream gene id
SNP gene ids23189
Upstream gene distance
Downstream gene distance
SNP risk allelers12352279-C
SNPsrs12352279
Merged0
SNP id current12352279
Contextintron_variant
Intergenic0
Allele frequency0.07
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.25
%95 Ci[1.14-1.37]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002079