SNP Detail For rs12348435
1.Mapping Information
Human SNP ID rs12348435
Human chromosome chr9
Human SNP position 28600144
Pig chromosome chr10
Pig SNP position 42390173
2.Annotation Information
PubMed ID24962325
JournalDrug Alcohol Depend
Linkwww.ncbi.nlm.nih.gov/pubmed/24962325
StudyGenome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.
Disease/TraitAlcohol dependence (age at onset)
Initial sample685 European ancestry cases, 1,103 European ancestry controls from 118 families
Replication sampleNA
Region9p21.1
Chromosome idchr9
Chromosome position28600144
Reported geneNR
Mapped geneLINGO2, LOC105376004
Upstream gene id
Downstream gene id
SNP gene ids158038, 105376004
Upstream gene distance
Downstream gene distance
SNP risk allelers12348435-C
SNPsrs12348435
Merged0
SNP id current12348435
Contextintron_variant
Intergenic0
Allele frequency0.04
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.59
%95 Ci[1.39-1.79]
PlatformIllumina [4058415] (imputed)
CNVN
Mapped traitage at onset, alcohol dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004847, http://www.ebi.ac.uk/efo/EFO_0003829
Study accessionGCST002477