Human SNP ID | rs12348435 |
---|---|
Human chromosome | chr9 |
Human SNP position | 28600144 |
Pig chromosome | chr10 |
Pig SNP position | 42390173 |
PubMed ID | 24962325 |
---|---|
Journal | Drug Alcohol Depend |
Link | www.ncbi.nlm.nih.gov/pubmed/24962325 |
Study | Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families. |
Disease/Trait | Alcohol dependence (age at onset) |
Initial sample | 685 European ancestry cases, 1,103 European ancestry controls from 118 families |
Replication sample | NA |
Region | 9p21.1 |
Chromosome id | chr9 |
Chromosome position | 28600144 |
Reported gene | NR |
Mapped gene | LINGO2, LOC105376004 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 158038, 105376004 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12348435-C |
SNPs | rs12348435 |
Merged | 0 |
SNP id current | 12348435 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.04 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.59 |
%95 Ci | [1.39-1.79] |
Platform | Illumina [4058415] (imputed) |
CNV | N |
Mapped trait | age at onset, alcohol dependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004847, http://www.ebi.ac.uk/efo/EFO_0003829 |
Study accession | GCST002477 |