SNP Detail For rs12339094
1.Mapping Information
Human SNP ID rs12339094
Human chromosome chr9
Human SNP position 87795307
Pig chromosome chr10
Pig SNP position 31949697
2.Annotation Information
PubMed ID24665060
JournalJ Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24665060
StudyGenome-wide association study of smoking behaviours among Bangladeshi adults.
Disease/TraitSmoking quantity
Initial sample1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females
Replication sampleNA
Region9q21.33
Chromosome idchr9
Chromosome position87795307
Reported geneNR
Mapped geneCTSL3P - ELF2P3
Upstream gene id392360
Downstream gene id260336
SNP gene ids
Upstream gene distance8423
Downstream gene distance21167
SNP risk allelers12339094-?
SNPsrs12339094
Merged0
SNP id current12339094
Contextdownstream_gene_variant
Intergenic1
Allele frequency
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta
%95 Ci
PlatformIllumina [1211988] (imputed)
CNVN
Mapped traitsmoking behaviour measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005671
Study accessionGCST002393