SNP Detail For rs12289961
1.Mapping Information
Human SNP ID rs12289961
Human chromosome chr11
Human SNP position 58292720
Pig chromosome chr2
Pig SNP position 12463172
2.Annotation Information
PubMed ID23349640
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23349640
StudySusceptibility loci associated with specific and shared subtypes of lymphoid malignancies.
Disease/TraitLymphoma
Initial sample275 Follicular non-Hodgkin__s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin__s Lymphoma cases, 198 other non-Hodgkin__s Lymphoma cases, 202 Hodgkin__s Lymphoma cases, 4,044 controls
Replication sample202 European ancestry Follicular non-Hodgkin__s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin__s Lymphoma cases, 577 European ancestry other non-Hodgkin__s Lymphoma cases, 99 European ancestry Hodgkin__s Lymphoma cases, 2,596 Euro
Region11q12.1
Chromosome idchr11
Chromosome position58292720
Reported geneLPXN
Mapped geneOR10W1 - OR5B17
Upstream gene id81341
Downstream gene id219965
SNP gene ids
Upstream gene distance24460
Downstream gene distance65405
SNP risk allelers12289961-T
SNPsrs12289961
Merged0
SNP id current12289961
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequencyNR
P value0.00000004
Pvalue mlog7.39794000867203
P value text(LYM)
Or beta1.29
%95 Ci[1.17-1.40]
PlatformAffymetrix [530583]
CNVN
Mapped traitlymphoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000574
Study accessionGCST001826
PubMed ID23349640
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23349640
StudySusceptibility loci associated with specific and shared subtypes of lymphoid malignancies.
Disease/TraitLymphoma
Initial sample275 Follicular non-Hodgkin__s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin__s Lymphoma cases, 198 other non-Hodgkin__s Lymphoma cases, 202 Hodgkin__s Lymphoma cases, 4,044 controls
Replication sample202 European ancestry Follicular non-Hodgkin__s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin__s Lymphoma cases, 577 European ancestry other non-Hodgkin__s Lymphoma cases, 99 European ancestry Hodgkin__s Lymphoma cases, 2,596 Euro
Region11q12.1
Chromosome idchr11
Chromosome position58292720
Reported geneLPXN
Mapped geneOR10W1 - OR5B17
Upstream gene id81341
Downstream gene id219965
SNP gene ids
Upstream gene distance24460
Downstream gene distance65405
SNP risk allelers12289961-T
SNPsrs12289961
Merged0
SNP id current12289961
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequencyNR
P value0.0000001
Pvalue mlog7
P value text(NHL)
Or beta1.29
%95 Ci[1.17-1.42]
PlatformAffymetrix [530583]
CNVN
Mapped traitlymphoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000574
Study accessionGCST001826