Human SNP ID | rs12289961 |
---|---|
Human chromosome | chr11 |
Human SNP position | 58292720 |
Pig chromosome | chr2 |
Pig SNP position | 12463172 |
PubMed ID | 23349640 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23349640 |
Study | Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies. |
Disease/Trait | Lymphoma |
Initial sample | 275 Follicular non-Hodgkin__s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin__s Lymphoma cases, 198 other non-Hodgkin__s Lymphoma cases, 202 Hodgkin__s Lymphoma cases, 4,044 controls |
Replication sample | 202 European ancestry Follicular non-Hodgkin__s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin__s Lymphoma cases, 577 European ancestry other non-Hodgkin__s Lymphoma cases, 99 European ancestry Hodgkin__s Lymphoma cases, 2,596 Euro |
Region | 11q12.1 |
Chromosome id | chr11 |
Chromosome position | 58292720 |
Reported gene | LPXN |
Mapped gene | OR10W1 - OR5B17 |
Upstream gene id | 81341 |
Downstream gene id | 219965 |
SNP gene ids | |
Upstream gene distance | 24460 |
Downstream gene distance | 65405 |
SNP risk allele | rs12289961-T |
SNPs | rs12289961 |
Merged | 0 |
SNP id current | 12289961 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (LYM) |
Or beta | 1.29 |
%95 Ci | [1.17-1.40] |
Platform | Affymetrix [530583] |
CNV | N |
Mapped trait | lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000574 |
Study accession | GCST001826 |
PubMed ID | 23349640 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23349640 |
Study | Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies. |
Disease/Trait | Lymphoma |
Initial sample | 275 Follicular non-Hodgkin__s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin__s Lymphoma cases, 198 other non-Hodgkin__s Lymphoma cases, 202 Hodgkin__s Lymphoma cases, 4,044 controls |
Replication sample | 202 European ancestry Follicular non-Hodgkin__s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin__s Lymphoma cases, 577 European ancestry other non-Hodgkin__s Lymphoma cases, 99 European ancestry Hodgkin__s Lymphoma cases, 2,596 Euro |
Region | 11q12.1 |
Chromosome id | chr11 |
Chromosome position | 58292720 |
Reported gene | LPXN |
Mapped gene | OR10W1 - OR5B17 |
Upstream gene id | 81341 |
Downstream gene id | 219965 |
SNP gene ids | |
Upstream gene distance | 24460 |
Downstream gene distance | 65405 |
SNP risk allele | rs12289961-T |
SNPs | rs12289961 |
Merged | 0 |
SNP id current | 12289961 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (NHL) |
Or beta | 1.29 |
%95 Ci | [1.17-1.42] |
Platform | Affymetrix [530583] |
CNV | N |
Mapped trait | lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000574 |
Study accession | GCST001826 |