Human SNP ID | rs12284594 |
---|---|
Human chromosome | chr11 |
Human SNP position | 125309957 |
Pig chromosome | chr9 |
Pig SNP position | 58079303 |
PubMed ID | 21298047 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/21298047 |
Study | The nuclear transcription factor PKNOX2 is a candidate gene for substance dependence in European-origin women. |
Disease/Trait | Substance dependence |
Initial sample | 2,524 European ancestry individuals, 1,103 African ancestry individuals |
Replication sample | NA |
Region | 11q24.2 |
Chromosome id | chr11 |
Chromosome position | 125309957 |
Reported gene | PKNOX2 |
Mapped gene | PKNOX2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 63876 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12284594-G |
SNPs | rs12284594 |
Merged | 0 |
SNP id current | 12284594 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000007 |
Pvalue mlog | 7.15490195998574 |
P value text | (EA women) |
Or beta | 1.77 |
%95 Ci | [NR] |
Platform | Illumina [830696] |
CNV | N |
Mapped trait | drug dependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003890 |
Study accession | GCST000956 |