SNP Detail For rs12284594
1.Mapping Information
Human SNP ID rs12284594
Human chromosome chr11
Human SNP position 125309957
Pig chromosome chr9
Pig SNP position 58079303
2.Annotation Information
PubMed ID21298047
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/21298047
StudyThe nuclear transcription factor PKNOX2 is a candidate gene for substance dependence in European-origin women.
Disease/TraitSubstance dependence
Initial sample2,524 European ancestry individuals, 1,103 African ancestry individuals
Replication sampleNA
Region11q24.2
Chromosome idchr11
Chromosome position125309957
Reported genePKNOX2
Mapped genePKNOX2
Upstream gene id
Downstream gene id
SNP gene ids63876
Upstream gene distance
Downstream gene distance
SNP risk allelers12284594-G
SNPsrs12284594
Merged0
SNP id current12284594
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000007
Pvalue mlog7.15490195998574
P value text(EA women)
Or beta1.77
%95 Ci[NR]
PlatformIllumina [830696]
CNVN
Mapped traitdrug dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003890
Study accessionGCST000956