SNP Detail For rs12280753
1.Mapping Information
Human SNP ID rs12280753
Human chromosome chr11
Human SNP position 116742944
Pig chromosome chr9
Pig SNP position 49203612
2.Annotation Information
PubMed ID20838585
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20838585
StudyLongitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.
Disease/TraitCardiovascular disease risk factors
Initial sample525 European ancestry individuals
Replication sample2,265 European ancestry individuals
Region11q23.3
Chromosome idchr11
Chromosome position116742944
Reported geneCADM1, APOA5, BUD13
Mapped geneLOC101929011 - BUD13
Upstream gene id101929011
Downstream gene id84811
SNP gene ids
Upstream gene distance84692
Downstream gene distance5226
SNP risk allelers12280753-T
SNPsrs12280753
Merged0
SNP id current12280753
Contextregulatory_region_variant
Intergenic1
Allele frequency0.07
P value0.000008
Pvalue mlog5.09691001300805
P value text(triglycerides)
Or beta0.69
%95 Ci[0.40-0.98] % SD increase, SNPxAGE interaction
PlatformIllumina [545821]
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST000789