SNP Detail For rs1227756
1.Mapping Information
Human SNP ID rs1227756
Human chromosome chr10
Human SNP position 69828748
Pig chromosome chr14
Pig SNP position 78733520
2.Annotation Information
PubMed ID20708005
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/20708005
StudyGenome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
Disease/TraitNon-alcoholic fatty liver disease histology (lobular)
Initial sample236 European ancestry cases
Replication sampleNA
Region10q22.1
Chromosome idchr10
Chromosome position69828748
Reported geneCOL13A1
Mapped geneCOL13A1
Upstream gene id
Downstream gene id
SNP gene ids1305
Upstream gene distance
Downstream gene distance
SNP risk allelers1227756-G
SNPsrs1227756
Merged0
SNP id current1227756
Contextintron_variant
Intergenic0
Allele frequency0.46
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta0.57
%95 Ci[NR] unit increase
PlatformIllumina [324623]
CNVN
Mapped traitnon-alcoholic fatty liver disease, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST000766