SNP Detail For rs12265836
1.Mapping Information
Human SNP ID rs12265836
Human chromosome chr10
Human SNP position 11677011
Pig chromosome chr10
Pig SNP position 65887999
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region10p14
Chromosome idchr10
Chromosome position11677011
Reported geneUSP6NL
Mapped geneLOC105376413, LOC105376412
Upstream gene id
Downstream gene id
SNP gene ids105376413, 105376412
Upstream gene distance
Downstream gene distance
SNP risk allelers12265836-C
SNPsrs12265836
Merged0
SNP id current12265836
Contextupstream_gene_variant
Intergenic0
Allele frequency0.106
P value0.000008
Pvalue mlog5.09691001300805
P value text(AST/ALT)
Or beta0.03
%95 Ci[NR] unit increase
PlatformIllumina [899892]
CNVN
Mapped traitaspartate aminotransferase measurement, serum alanine aminotransferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004736, http://www.ebi.ac.uk/efo/EFO_0004735
Study accessionGCST001762