SNP Detail For rs12251332
1.Mapping Information
Human SNP ID rs12251332
Human chromosome chr10
Human SNP position 66206816
Pig chromosome chr14
Pig SNP position 75399658
2.Annotation Information
PubMed ID23934736
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23934736
StudyGenome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
Disease/TraitMetabolite levels (Pyroglutamine)
Initial sample1,260 African American individuals
Replication sampleNA
Region10q21.3
Chromosome idchr10
Chromosome position66206816
Reported geneCTNNA3
Mapped geneCTNNA3, LOC105378340
Upstream gene id
Downstream gene id
SNP gene ids29119, 105378340
Upstream gene distance
Downstream gene distance
SNP risk allelers12251332-C
SNPsrs12251332
Merged0
SNP id current12251332
Contextintron_variant
Intergenic0
Allele frequency
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta0.17
%95 Ci[0.11-0.23] unit decrease
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitpyroglutamine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005408
Study accessionGCST002118