SNP Detail For rs12249377
1.Mapping Information
Human SNP ID rs12249377
Human chromosome chr10
Human SNP position 90833199
Pig chromosome chr14
Pig SNP position 111642135
2.Annotation Information
PubMed ID24736177
JournalNeuroimage
Linkwww.ncbi.nlm.nih.gov/pubmed/24736177
StudyCommon genetic variants and gene expression associated with white matter microstructure in the human brain.
Disease/TraitWhite matter microstructure (global fractional anisotropy)
Initial sample727 Mexican American individuals from 65 families, 49 Mexican American individuals
Replication sampleNA
Region10q23.31
Chromosome idchr10
Chromosome position90833199
Reported geneHTR7
Mapped geneHTR7
Upstream gene id
Downstream gene id
SNP gene ids3363
Upstream gene distance
Downstream gene distance
SNP risk allelers12249377-?
SNPsrs12249377
Merged0
SNP id current12249377
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta
%95 Ci
PlatformIllumina [929187]
CNVN
Mapped traitwhite matter microstructure measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005674
Study accessionGCST002409