SNP Detail For rs12236871
1.Mapping Information
Human SNP ID rs12236871
Human chromosome chr9
Human SNP position 3589117
Pig chromosome JH118911-1
Pig SNP position 21870
2.Annotation Information
PubMed ID25967671
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25967671
StudyGenome-wide association analysis identifies three new risk loci for gout arthritis in Han Chinese.
Disease/TraitGout
Initial sample1,255 Han Chinese ancestry male cases, 1,848 Han Chinese ancestry male controls
Replication sample3,020 Han Chinese ancestry male cases, 4,424 Han Chinese ancestry male controls
Region9p24.2
Chromosome idchr9
Chromosome position3589117
Reported geneRFX3
Mapped geneRFX3 - LOC105375960
Upstream gene id5991
Downstream gene id105375960
SNP gene ids
Upstream gene distance63116
Downstream gene distance74310
SNP risk allelers12236871-?
SNPsrs12236871
Merged0
SNP id current12236871
Contextintron_variant
Intergenic1
Allele frequency0.589
P value0.0000000001
Pvalue mlog10
P value text
Or beta1.23
%95 Ci[NR]
PlatformAffymetrix [603505]
CNVN
Mapped traitgout
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004274
Study accessionGCST002909