SNP Detail For rs12232497
1.Mapping Information
Human SNP ID rs12232497
Human chromosome chr17
Human SNP position 39883866
Pig chromosome chrX
Pig SNP position 26453452
2.Annotation Information
PubMed ID26301688
JournalNat Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26301688
StudyMeta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.
Disease/TraitPediatric autoimmune diseases
Initial sample97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry
Replication sampleNA
Region17q21.1
Chromosome idchr17
Chromosome position39883866
Reported geneIKZF3
Mapped geneZPBP2 - GSDMB
Upstream gene id124626
Downstream gene id55876
SNP gene ids
Upstream gene distance5970
Downstream gene distance20729
SNP risk allelers12232497-C
SNPsrs12232497
Merged
SNP id current12232497
Contextintergenic_variant
Intergenic1
Allele frequency0.45
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta
%95 Ci
PlatformIllumina [7347414] (imputed)
CNVN
Mapped traitautoimmune thyroid disease, type I diabetes mellitus, Common variable immunodeficiency, chronic childhood arthritis, ankylosing spondylitis, psoriasis, celiac disease, ulcerative colitis, Crohn__s disease, autoimmune disease, systemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006812, http://www.ebi.ac.uk/efo/EFO_0001359, http://www.orpha.net/ORDO/Orphanet_1572, http://www.ebi.ac.uk/efo/EFO_0002609, http://www.ebi.ac.uk/efo/EFO_0003898, http://www.ebi.ac.uk/efo/EFO_0000676, http://www.ebi.ac.uk/efo
Study accessionGCST003097