SNP Detail For rs12230170
1.Mapping Information
Human SNP ID rs12230170
Human chromosome chr12
Human SNP position 128762838
Pig chromosome chr14
Pig SNP position 27815889
2.Annotation Information
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region12q24.33
Chromosome idchr12
Chromosome position128762838
Reported geneTMEM132C, SLC15A4
Mapped geneTMEM132C - SLC15A4
Upstream gene id92293
Downstream gene id121260
SNP gene ids
Upstream gene distance54923
Downstream gene distance30356
SNP risk allelers12230170-T
SNPsrs12230170
Merged
SNP id current12230170
Contextintergenic_variant
Intergenic1
Allele frequency0.1
P value0.0000006
Pvalue mlog6.22184874961635
P value text(EA)
Or beta0.5482
%95 Ci[0.34-0.76] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075