Human SNP ID | rs12230170 |
---|---|
Human chromosome | chr12 |
Human SNP position | 128762838 |
Pig chromosome | chr14 |
Pig SNP position | 27815889 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 12q24.33 |
Chromosome id | chr12 |
Chromosome position | 128762838 |
Reported gene | TMEM132C, SLC15A4 |
Mapped gene | TMEM132C - SLC15A4 |
Upstream gene id | 92293 |
Downstream gene id | 121260 |
SNP gene ids | |
Upstream gene distance | 54923 |
Downstream gene distance | 30356 |
SNP risk allele | rs12230170-T |
SNPs | rs12230170 |
Merged | |
SNP id current | 12230170 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.1 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | (EA) |
Or beta | 0.5482 |
%95 Ci | [0.34-0.76] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |