Human SNP ID | rs12224794 |
---|---|
Human chromosome | chr11 |
Human SNP position | 41047350 |
Pig chromosome | chr2 |
Pig SNP position | 22659916 |
PubMed ID | 26586795 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/26586795 |
Study | Common Genetic Variation and Survival after Colorectal Cancer Diagnosis: A Genome-Wide Analysis. |
Disease/Trait | Survival in colorectal cancer |
Initial sample | up to 2,843 European ancestry cases without distant metastases, up to 462 European ancestry cases with distant metastases, up to 189 European ancestry cases of unknown stage |
Replication sample | up to 3,205 European ancestry cases without distant metastases, up to 435 European ancestry cases with distant metastases, up to 124 European ancestry cases of unknown stage |
Region | 11p12 |
Chromosome id | chr11 |
Chromosome position | 41047350 |
Reported gene | LRRC4C |
Mapped gene | LRRC4C |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57689 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12224794-? |
SNPs | rs12224794 |
Merged | |
SNP id current | 12224794 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.55 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Overall Survival) |
Or beta | 1.1494253 |
%95 Ci | [1.09-1.22] |
Platform | Illumina [~ 2700000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer, survival time |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0000714 |
Study accession | GCST003229 |