SNP Detail For rs12224794
1.Mapping Information
Human SNP ID rs12224794
Human chromosome chr11
Human SNP position 41047350
Pig chromosome chr2
Pig SNP position 22659916
2.Annotation Information
PubMed ID26586795
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/26586795
StudyCommon Genetic Variation and Survival after Colorectal Cancer Diagnosis: A Genome-Wide Analysis.
Disease/TraitSurvival in colorectal cancer
Initial sampleup to 2,843 European ancestry cases without distant metastases, up to 462 European ancestry cases with distant metastases, up to 189 European ancestry cases of unknown stage
Replication sampleup to 3,205 European ancestry cases without distant metastases, up to 435 European ancestry cases with distant metastases, up to 124 European ancestry cases of unknown stage
Region11p12
Chromosome idchr11
Chromosome position41047350
Reported geneLRRC4C
Mapped geneLRRC4C
Upstream gene id
Downstream gene id
SNP gene ids57689
Upstream gene distance
Downstream gene distance
SNP risk allelers12224794-?
SNPsrs12224794
Merged
SNP id current12224794
Contextintron_variant
Intergenic0
Allele frequency0.55
P value0.000003
Pvalue mlog5.52287874528033
P value text(Overall Survival)
Or beta1.1494253
%95 Ci[1.09-1.22]
PlatformIllumina [~ 2700000] (imputed)
CNVN
Mapped traitcolorectal cancer, survival time
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0000714
Study accessionGCST003229