SNP Detail For rs12220488
1.Mapping Information
Human SNP ID rs12220488
Human chromosome chr10
Human SNP position 62459241
Pig chromosome chr14
Pig SNP position 71133641
2.Annotation Information
PubMed ID25342443
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25342443
StudyGenome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.
Disease/TraitMammographic density (non-dense area)
Initial sample7,600 European ancestry individuals
Replication sample343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals
Region10q21.2
Chromosome idchr10
Chromosome position62459241
Reported geneZNF365
Mapped geneZNF365
Upstream gene id
Downstream gene id
SNP gene ids22891
Upstream gene distance
Downstream gene distance
SNP risk allelers12220488-A
SNPsrs12220488
Merged0
SNP id current12220488
Contextintron_variant
Intergenic0
Allele frequency0.55
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitnon-dense area measurement, mammographic density measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006504, http://www.ebi.ac.uk/efo/EFO_0005941
Study accessionGCST002668