SNP Detail For rs12212193
1.Mapping Information
Human SNP ID rs12212193
Human chromosome chr6
Human SNP position 90287050
Pig chromosome chr1
Pig SNP position 65267005
2.Annotation Information
PubMed ID21833088
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21833088
StudyGenetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
Disease/TraitMultiple sclerosis
Initial sample9,772 European ancestry cases, 16,849 European ancestry controls
Replication sample4,218 European ancestry cases, 7,296 European ancestry controls
Region6q15
Chromosome idchr6
Chromosome position90287050
Reported geneBACH2
Mapped geneBACH2
Upstream gene id
Downstream gene id
SNP gene ids60468
Upstream gene distance
Downstream gene distance
SNP risk allelers12212193-G
SNPsrs12212193
Merged0
SNP id current12212193
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.09
%95 Ci[1.08-1.1]
PlatformIllumina [465434]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST001198