Human SNP ID | rs12210538 |
---|---|
Human chromosome | chr6 |
Human SNP position | 110438805 |
Pig chromosome | chr1 |
Pig SNP position | 85909224 |
PubMed ID | 26068415 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26068415 |
Study | Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels. |
Disease/Trait | Acylcarnitine levels |
Initial sample | up to 7,478 European ancestry individuals |
Replication sample | 1,182 European ancestry individuals |
Region | 6q21 |
Chromosome id | chr6 |
Chromosome position | 110438805 |
Reported gene | SLC22A16 |
Mapped gene | SLC22A16 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 85413 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12210538-A |
SNPs | rs12210538 |
Merged | |
SNP id current | 12210538 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.808 |
P value | 5E-21 |
Pvalue mlog | 20.3010299956639 |
P value text | (Octadecadienylcarnitine) |
Or beta | 0.086 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [at least 296619] (imputed) |
CNV | N |
Mapped trait | acylcarnitine measurement, blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005059, http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002961 |