SNP Detail For rs12210538
1.Mapping Information
Human SNP ID rs12210538
Human chromosome chr6
Human SNP position 110438805
Pig chromosome chr1
Pig SNP position 85909224
2.Annotation Information
PubMed ID26068415
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26068415
StudyGenome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.
Disease/TraitAcylcarnitine levels
Initial sampleup to 7,478 European ancestry individuals
Replication sample1,182 European ancestry individuals
Region6q21
Chromosome idchr6
Chromosome position110438805
Reported geneSLC22A16
Mapped geneSLC22A16
Upstream gene id
Downstream gene id
SNP gene ids85413
Upstream gene distance
Downstream gene distance
SNP risk allelers12210538-A
SNPsrs12210538
Merged
SNP id current12210538
Contextmissense_variant
Intergenic0
Allele frequency0.808
P value5E-21
Pvalue mlog20.3010299956639
P value text(Octadecadienylcarnitine)
Or beta0.086
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [at least 296619] (imputed)
CNVN
Mapped traitacylcarnitine measurement, blood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005059, http://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002961