Human SNP ID | rs12209443 |
---|---|
Human chromosome | chr6 |
Human SNP position | 100057472 |
Pig chromosome | chr1 |
Pig SNP position | 75788171 |
PubMed ID | 26053186 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26053186 |
Study | Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. |
Disease/Trait | 3-hydroxypropylmercapturic acid levels in smokers |
Initial sample | 362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals |
Replication sample | NA |
Region | 6q16.3 |
Chromosome id | chr6 |
Chromosome position | 100057472 |
Reported gene | NR |
Mapped gene | MCHR2-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 728012 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12209443-? |
SNPs | rs12209443 |
Merged | |
SNP id current | 12209443 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Native Hawaiian) |
Or beta | 0.6219 |
%95 Ci | [NR] unit increase |
Platform | Illumina [up to 11892802] (imputed) |
CNV | N |
Mapped trait | smoking behavior, 3-hydroxypropylmercapturic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014 |
Study accession | GCST002956 |