SNP Detail For rs12208357
1.Mapping Information
Human SNP ID rs12208357
Human chromosome chr6
Human SNP position 160122116
Pig chromosome chr1
Pig SNP position 9164076
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitCholesterol, total
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region6q25.3
Chromosome idchr6
Chromosome position160122116
Reported geneLPA
Mapped geneSLC22A1
Upstream gene id
Downstream gene id
SNP gene ids6580
Upstream gene distance
Downstream gene distance
SNP risk allelers12208357-T
SNPsrs12208357
Merged
SNP id current12208357
Contextmissense_variant
Intergenic0
Allele frequency0.06
P value0.00000000000009
Pvalue mlog13.0457574905606
P value text
Or beta0.092
%95 Ci[0.068-0.116] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002896