Human SNP ID | rs12208357 |
---|---|
Human chromosome | chr6 |
Human SNP position | 160122116 |
Pig chromosome | chr1 |
Pig SNP position | 9164076 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Cholesterol, total |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 6q25.3 |
Chromosome id | chr6 |
Chromosome position | 160122116 |
Reported gene | LPA |
Mapped gene | SLC22A1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6580 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12208357-T |
SNPs | rs12208357 |
Merged | |
SNP id current | 12208357 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.06 |
P value | 0.00000000000009 |
Pvalue mlog | 13.0457574905606 |
P value text | |
Or beta | 0.092 |
%95 Ci | [0.068-0.116] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST002896 |