SNP Detail For rs12207186
1.Mapping Information
Human SNP ID rs12207186
Human chromosome chr6
Human SNP position 161893889
Pig chromosome chr1
Pig SNP position 7676389
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region6q26
Chromosome idchr6
Chromosome position161893889
Reported geneNR
Mapped genePARK2
Upstream gene id
Downstream gene id
SNP gene ids5071
Upstream gene distance
Downstream gene distance
SNP risk allelers12207186-T
SNPsrs12207186
Merged0
SNP id current12207186
Contextintron_variant
Intergenic0
Allele frequency0.0677100908685969
P value0.000005
Pvalue mlog5.30102999566398
P value text(IGP32)
Or beta0.2882
%95 Ci[0.16-0.41] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848