SNP Detail For rs12202017
1.Mapping Information
Human SNP ID rs12202017
Human chromosome chr6
Human SNP position 133852013
Pig chromosome chr1
Pig SNP position 33508951
2.Annotation Information
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitCoronary artery disease
Initial sample42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls,
Replication sampleNA
Region6q23.2
Chromosome idchr6
Chromosome position133852013
Reported geneTCF21
Mapped geneLINC01312, TARID
Upstream gene id
Downstream gene id
SNP gene ids154089, 100507308
Upstream gene distance
Downstream gene distance
SNP risk allelers12202017-A
SNPsrs12202017
Merged
SNP id current12202017
Contextintron_variant
Intergenic0
Allele frequency0.699953
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta1.07
%95 Ci[1.05- 1.09]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitcoronary artery disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000378
Study accessionGCST003116