SNP Detail For rs12200560
1.Mapping Information
Human SNP ID rs12200560
Human chromosome chr6
Human SNP position 96632322
Pig chromosome chr1
Pig SNP position 72139905
2.Annotation Information
PubMed ID22319020
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22319020
StudyA genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.
Disease/TraitCoronary heart disease
Initial sample7,123 European ancestry cases, 6,826 European ancestry controls
Replication sample5,211 European ancestry cases, 5,821 European ancestry controls
Region6q16.1
Chromosome idchr6
Chromosome position96632322
Reported geneFHL5
Mapped geneFHL5 - RPS7P8
Upstream gene id9457
Downstream gene id442237
SNP gene ids
Upstream gene distance13702
Downstream gene distance16133
SNP risk allelers12200560-?
SNPsrs12200560
Merged0
SNP id current12200560
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.11
%95 Ci[NR]
PlatformAffymetrix [~ 5000000] (imputed)
CNVN
Mapped traitcoronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST001401