Human SNP ID | rs12200560 |
---|---|
Human chromosome | chr6 |
Human SNP position | 96632322 |
Pig chromosome | chr1 |
Pig SNP position | 72139905 |
PubMed ID | 22319020 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22319020 |
Study | A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex. |
Disease/Trait | Coronary heart disease |
Initial sample | 7,123 European ancestry cases, 6,826 European ancestry controls |
Replication sample | 5,211 European ancestry cases, 5,821 European ancestry controls |
Region | 6q16.1 |
Chromosome id | chr6 |
Chromosome position | 96632322 |
Reported gene | FHL5 |
Mapped gene | FHL5 - RPS7P8 |
Upstream gene id | 9457 |
Downstream gene id | 442237 |
SNP gene ids | |
Upstream gene distance | 13702 |
Downstream gene distance | 16133 |
SNP risk allele | rs12200560-? |
SNPs | rs12200560 |
Merged | 0 |
SNP id current | 12200560 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 1.11 |
%95 Ci | [NR] |
Platform | Affymetrix [~ 5000000] (imputed) |
CNV | N |
Mapped trait | coronary heart disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001645 |
Study accession | GCST001401 |