Human SNP ID | rs1218582 |
---|---|
Human chromosome | chr1 |
Human SNP position | 154861707 |
Pig chromosome | chr4 |
Pig SNP position | 103709397 |
PubMed ID | 23535732 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535732 |
Study | Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. |
Disease/Trait | Prostate cancer |
Initial sample | 11,085 European ancestry cases, 11,463 European ancestry controls |
Replication sample | 19,662 European ancestry cases, 19,715 European ancestry controls |
Region | 1q21.3 |
Chromosome id | chr1 |
Chromosome position | 154861707 |
Reported gene | ADAM15, ADAR, CKS1B, DCST1, DCST2, EFNA3, EFNA4, LOC10050, FLAD1, KCNN3, LENEP, LOC100505666, MIR4258, PBXIP1, DPM3, PYGO2, EFNA1, SHC1, SLC50A1, ZBTB7B, PMVK |
Mapped gene | KCNN3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3782 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1218582-G |
SNPs | rs1218582 |
Merged | 0 |
SNP id current | 1218582 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.45 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.06 |
%95 Ci | [1.03-1.09] |
Platform | Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001942 |