SNP Detail For rs1218582
1.Mapping Information
Human SNP ID rs1218582
Human chromosome chr1
Human SNP position 154861707
Pig chromosome chr4
Pig SNP position 103709397
2.Annotation Information
PubMed ID23535732
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535732
StudyIdentification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
Disease/TraitProstate cancer
Initial sample11,085 European ancestry cases, 11,463 European ancestry controls
Replication sample19,662 European ancestry cases, 19,715 European ancestry controls
Region1q21.3
Chromosome idchr1
Chromosome position154861707
Reported geneADAM15, ADAR, CKS1B, DCST1, DCST2, EFNA3, EFNA4, LOC10050, FLAD1, KCNN3, LENEP, LOC100505666, MIR4258, PBXIP1, DPM3, PYGO2, EFNA1, SHC1, SLC50A1, ZBTB7B, PMVK
Mapped geneKCNN3
Upstream gene id
Downstream gene id
SNP gene ids3782
Upstream gene distance
Downstream gene distance
SNP risk allelers1218582-G
SNPsrs1218582
Merged0
SNP id current1218582
Contextintron_variant
Intergenic0
Allele frequency0.45
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.06
%95 Ci[1.03-1.09]
PlatformIllumina [~ 2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001942