SNP Detail For rs12155172
1.Mapping Information
Human SNP ID rs12155172
Human chromosome chr7
Human SNP position 20954872
Pig chromosome chr9
Pig SNP position 99342712
2.Annotation Information
PubMed ID19767753
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19767753
StudyIdentification of seven new prostate cancer susceptibility loci through a genome-wide association study.
Disease/TraitProstate cancer
Initial sample1,854 European ancestry cases, 1,894 European ancestry controls
Replication sample19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry
Region7p15.3
Chromosome idchr7
Chromosome position20954872
Reported geneNR
Mapped geneLINC01162
Upstream gene id
Downstream gene id
SNP gene ids104355138
Upstream gene distance
Downstream gene distance
SNP risk allelers12155172-?
SNPsrs12155172
Merged0
SNP id current12155172
Contextintron_variant
Intergenic0
Allele frequency0.2
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.05
%95 Ci[1.00-1.10]
PlatformIllumina [541129]
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST000488
PubMed ID23535732
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535732
StudyIdentification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
Disease/TraitProstate cancer
Initial sample11,085 European ancestry cases, 11,463 European ancestry controls
Replication sample19,662 European ancestry cases, 19,715 European ancestry controls
Region7p15.3
Chromosome idchr7
Chromosome position20954872
Reported geneSP8, ABCB5, RPL23P8
Mapped geneLINC01162
Upstream gene id
Downstream gene id
SNP gene ids104355138
Upstream gene distance
Downstream gene distance
SNP risk allelers12155172-A
SNPsrs12155172
Merged0
SNP id current12155172
Contextintron_variant
Intergenic0
Allele frequency0.23
P value0.0000000000005
Pvalue mlog12.3010299956639
P value text
Or beta1.11
%95 Ci[1.07-1.15]
PlatformIllumina [~ 2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001942