Human SNP ID | rs12155172 |
---|---|
Human chromosome | chr7 |
Human SNP position | 20954872 |
Pig chromosome | chr9 |
Pig SNP position | 99342712 |
PubMed ID | 19767753 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19767753 |
Study | Identification of seven new prostate cancer susceptibility loci through a genome-wide association study. |
Disease/Trait | Prostate cancer |
Initial sample | 1,854 European ancestry cases, 1,894 European ancestry controls |
Replication sample | 19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry |
Region | 7p15.3 |
Chromosome id | chr7 |
Chromosome position | 20954872 |
Reported gene | NR |
Mapped gene | LINC01162 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 104355138 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12155172-? |
SNPs | rs12155172 |
Merged | 0 |
SNP id current | 12155172 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 1.05 |
%95 Ci | [1.00-1.10] |
Platform | Illumina [541129] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST000488 |
PubMed ID | 23535732 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535732 |
Study | Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. |
Disease/Trait | Prostate cancer |
Initial sample | 11,085 European ancestry cases, 11,463 European ancestry controls |
Replication sample | 19,662 European ancestry cases, 19,715 European ancestry controls |
Region | 7p15.3 |
Chromosome id | chr7 |
Chromosome position | 20954872 |
Reported gene | SP8, ABCB5, RPL23P8 |
Mapped gene | LINC01162 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 104355138 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12155172-A |
SNPs | rs12155172 |
Merged | 0 |
SNP id current | 12155172 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.23 |
P value | 0.0000000000005 |
Pvalue mlog | 12.3010299956639 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.07-1.15] |
Platform | Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001942 |