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SNP Detail For rs12153048
1.Mapping Information
| Human SNP ID | rs12153048 |
|---|---|
| Human chromosome | chr5 |
| Human SNP position | 117177909 |
| Pig chromosome | chr2 |
| Pig SNP position | 126163159 |
2.Annotation Information
| PubMed ID | 24024966 |
|---|---|
| Journal | J Clin Periodontol |
| Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
| Study | Genome-wide association study of chronic periodontitis in a general German population. |
| Disease/Trait | Periodontitis (DPAL) |
| Initial sample | up to 2,501 European ancestry individuals |
| Replication sample | NA |
| Region | 5q23.1 |
| Chromosome id | chr5 |
| Chromosome position | 117177909 |
| Reported gene | SEMA6A |
| Mapped gene | LOC105379137 - LOC105379138 |
| Upstream gene id | 105379137 |
| Downstream gene id | 105379138 |
| SNP gene ids | |
| Upstream gene distance | 224482 |
| Downstream gene distance | 94025 |
| SNP risk allele | rs12153048-G |
| SNPs | rs12153048 |
| Merged | 0 |
| SNP id current | 12153048 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.06 |
| P value | 0.000002 |
| Pvalue mlog | 5.69897000433601 |
| P value text | (Age 20-81 years) |
| Or beta | 0.3396 |
| %95 Ci | [0.20-0.48] unit increase |
| Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
| CNV | N |
| Mapped trait | periodontitis |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
| Study accession | GCST002129 |
| PubMed ID | 24024966 |
| Journal | J Clin Periodontol |
| Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
| Study | Genome-wide association study of chronic periodontitis in a general German population. |
| Disease/Trait | Periodontitis (DPAL) |
| Initial sample | up to 2,501 European ancestry individuals |
| Replication sample | NA |
| Region | 5q23.1 |
| Chromosome id | chr5 |
| Chromosome position | 117177909 |
| Reported gene | SEMA6A |
| Mapped gene | LOC105379137 - LOC105379138 |
| Upstream gene id | 105379137 |
| Downstream gene id | 105379138 |
| SNP gene ids | |
| Upstream gene distance | 224482 |
| Downstream gene distance | 94025 |
| SNP risk allele | rs12153048-G |
| SNPs | rs12153048 |
| Merged | 0 |
| SNP id current | 12153048 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.05 |
| P value | 0.000006 |
| Pvalue mlog | 5.22184874961635 |
| P value text | (Age 20-60 years) |
| Or beta | 0.3459 |
| %95 Ci | [0.20-0.49] unit increase |
| Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
| CNV | N |
| Mapped trait | periodontitis |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
| Study accession | GCST002129 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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