SNP Detail For rs12148337
1.Mapping Information
Human SNP ID rs12148337
Human chromosome chr15
Human SNP position 70296933
Pig chromosome chr1
Pig SNP position 186254814
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region15q23
Chromosome idchr15
Chromosome position70296933
Reported geneTLE3
Mapped geneLOC105370878
Upstream gene id
Downstream gene id
SNP gene ids105370878
Upstream gene distance
Downstream gene distance
SNP risk allelers12148337-T
SNPsrs12148337
Merged0
SNP id current12148337
Contextintergenic_variant
Intergenic0
Allele frequency0.465
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.06
%95 Ci[1.038-1.081]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region15q23
Chromosome idchr15
Chromosome position70296933
Reported geneNR
Mapped geneLOC105370878
Upstream gene id
Downstream gene id
SNP gene ids105370878
Upstream gene distance
Downstream gene distance
SNP risk allelers12148337-T
SNPsrs12148337
Merged0
SNP id current12148337
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.06
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048