Human SNP ID | rs12145922 |
---|---|
Human chromosome | chr1 |
Human SNP position | 88680551 |
Pig chromosome | chr4 |
Pig SNP position | 139938786 |
PubMed ID | 22001757 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22001757 |
Study | Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. |
Disease/Trait | Liver enzyme levels (gamma-glutamyl transferase) |
Initial sample | Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals |
Replication sample | NA |
Region | 1p22.2 |
Chromosome id | chr1 |
Chromosome position | 88680551 |
Reported gene | CCBL2, PKN2 |
Mapped gene | PKN2-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101927891 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12145922-A |
SNPs | rs12145922 |
Merged | 0 |
SNP id current | 12145922 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.61 |
P value | 0.00000000004 |
Pvalue mlog | 10.397940008672 |
P value text | |
Or beta | 2.8 |
%95 Ci | [2.20-3.40] % increase |
Platform | Affymetrix, Illumina, Perlegen [~ 2600000] (imputed) |
CNV | N |
Mapped trait | serum gamma-glutamyl transferase measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004532 |
Study accession | GCST001277 |