Human SNP ID | rs12143789 |
---|---|
Human chromosome | chr1 |
Human SNP position | 118954531 |
Pig chromosome | chr4 |
Pig SNP position | 111871672 |
PubMed ID | 25673412 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 1p12 |
Chromosome id | chr1 |
Chromosome position | 118954531 |
Reported gene | TBX15 |
Mapped gene | TBX15 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6913 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12143789-C |
SNPs | rs12143789 |
Merged | 0 |
SNP id current | 12143789 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.209 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (EA, men) |
Or beta | 0.0274 |
%95 Ci | [0.015-0.039] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 1p12 |
Chromosome id | chr1 |
Chromosome position | 118954531 |
Reported gene | TBX15 |
Mapped gene | TBX15 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6913 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12143789-C |
SNPs | rs12143789 |
Merged | 0 |
SNP id current | 12143789 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2055 |
P value | 0.000000008 |
Pvalue mlog | 8.09691001300805 |
P value text | (EA) |
Or beta | 0.0244 |
%95 Ci | [0.016-0.033] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 1p12 |
Chromosome id | chr1 |
Chromosome position | 118954531 |
Reported gene | TBX15 |
Mapped gene | TBX15 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6913 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12143789-C |
SNPs | rs12143789 |
Merged | 0 |
SNP id current | 12143789 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2064 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (men) |
Or beta | 0.0273 |
%95 Ci | [0.015-0.039] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 1p12 |
Chromosome id | chr1 |
Chromosome position | 118954531 |
Reported gene | TBX15 |
Mapped gene | TBX15 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6913 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12143789-C |
SNPs | rs12143789 |
Merged | 0 |
SNP id current | 12143789 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2028 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 0.0246 |
%95 Ci | [0.016-0.033] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |