Human SNP ID | rs12141391 |
---|---|
Human chromosome | chr1 |
Human SNP position | 71808790 |
Pig chromosome | chr6 |
Pig SNP position | 130798103 |
PubMed ID | 18204098 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/18204098 |
Study | Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 1,311 European ancestry cases, 3,340 European ancestry controls |
Replication sample | 793 European ancestry cases, 857 European ancestry controls |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 71808790 |
Reported gene | NEGR1 |
Mapped gene | NEGR1-IT1, NEGR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100852409, 257194 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12141391-A |
SNPs | rs12141391 |
Merged | 0 |
SNP id current | 12141391 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.02 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [502033] |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST000144 |