SNP Detail For rs12141391
1.Mapping Information
Human SNP ID rs12141391
Human chromosome chr1
Human SNP position 71808790
Pig chromosome chr6
Pig SNP position 130798103
2.Annotation Information
PubMed ID18204098
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/18204098
StudyAssociation of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.
Disease/TraitSystemic lupus erythematosus
Initial sample1,311 European ancestry cases, 3,340 European ancestry controls
Replication sample793 European ancestry cases, 857 European ancestry controls
Region1p31.1
Chromosome idchr1
Chromosome position71808790
Reported geneNEGR1
Mapped geneNEGR1-IT1, NEGR1
Upstream gene id
Downstream gene id
SNP gene ids100852409, 257194
Upstream gene distance
Downstream gene distance
SNP risk allelers12141391-A
SNPsrs12141391
Merged0
SNP id current12141391
Contextintron_variant
Intergenic0
Allele frequency0.02
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta
%95 Ci
PlatformIllumina [502033]
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST000144