SNP Detail For rs12134663
1.Mapping Information
Human SNP ID rs12134663
Human chromosome chr1
Human SNP position 11778589
Pig chromosome chr6
Pig SNP position 65767175
2.Annotation Information
PubMed ID23824729
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/23824729
StudyCommon genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.
Disease/TraitHomocysteine levels
Initial sample44,147 European ancestry individuals
Replication sampleNA
Region1p36.22
Chromosome idchr1
Chromosome position11778589
Reported geneMTHFR
Mapped geneC1orf167, LOC102724659
Upstream gene id
Downstream gene id
SNP gene ids284498, 102724659
Upstream gene distance
Downstream gene distance
SNP risk allelers12134663-A
SNPsrs12134663
Merged0
SNP id current12134663
Contextintron_variant
Intergenic0
Allele frequency0.8
P value3E-21
Pvalue mlog20.5228787452803
P value text
Or beta0.101
%95 Ci[0.079-0.123] unit decrease
PlatformAffymetrix, Illumina [2090256] (imputed)
CNVN
Mapped traithomocysteine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004578
Study accessionGCST002087