Human SNP ID | rs12134663 |
---|---|
Human chromosome | chr1 |
Human SNP position | 11778589 |
Pig chromosome | chr6 |
Pig SNP position | 65767175 |
PubMed ID | 23824729 |
---|---|
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/23824729 |
Study | Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease. |
Disease/Trait | Homocysteine levels |
Initial sample | 44,147 European ancestry individuals |
Replication sample | NA |
Region | 1p36.22 |
Chromosome id | chr1 |
Chromosome position | 11778589 |
Reported gene | MTHFR |
Mapped gene | C1orf167, LOC102724659 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 284498, 102724659 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12134663-A |
SNPs | rs12134663 |
Merged | 0 |
SNP id current | 12134663 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.8 |
P value | 3E-21 |
Pvalue mlog | 20.5228787452803 |
P value text | |
Or beta | 0.101 |
%95 Ci | [0.079-0.123] unit decrease |
Platform | Affymetrix, Illumina [2090256] (imputed) |
CNV | N |
Mapped trait | homocysteine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004578 |
Study accession | GCST002087 |