Human SNP ID | rs12134279 |
---|---|
Human chromosome | chr1 |
Human SNP position | 197812068 |
Pig chromosome | chr10 |
Pig SNP position | 25260471 |
PubMed ID | 21399635 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21399635 |
Study | Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis. |
Disease/Trait | Primary biliary cirrhosis |
Initial sample | 1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al) |
Replication sample | 620 European ancestry cases, 2,514 European ancestry controls |
Region | 1q31.3 |
Chromosome id | chr1 |
Chromosome position | 197812068 |
Reported gene | DENND1B |
Mapped gene | DENND1B - C1orf53 |
Upstream gene id | 163486 |
Downstream gene id | 388722 |
SNP gene ids | |
Upstream gene distance | 29893 |
Downstream gene distance | 90484 |
SNP risk allele | rs12134279-T |
SNPs | rs12134279 |
Merged | 0 |
SNP id current | 12134279 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.2 |
P value | 0.00000000000002 |
Pvalue mlog | 13.698970004336 |
P value text | |
Or beta | 1.34 |
%95 Ci | [1.25-1.45] |
Platform | Illumina [507467] |
CNV | N |
Mapped trait | biliary liver cirrhosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004267 |
Study accession | GCST001010 |