SNP Detail For rs12130219
1.Mapping Information
Human SNP ID rs12130219
Human chromosome chr1
Human SNP position 152189630
Pig chromosome chr4
Pig SNP position 106097200
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region1q21.3
Chromosome idchr1
Chromosome position152189630
Reported geneFLG-AS1
Mapped geneRPTN - HRNR
Upstream gene id126638
Downstream gene id388697
SNP gene ids
Upstream gene distance30402
Downstream gene distance22446
SNP risk allelers12130219-?
SNPsrs12130219
Merged0
SNP id current12130219
Contextintron_variant
Intergenic1
Allele frequencyNR
P value1E-23
Pvalue mlog23
P value text(Opposed)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitatopic eczema, psoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000274, http://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740