Human SNP ID | rs12130219 |
---|---|
Human chromosome | chr1 |
Human SNP position | 152189630 |
Pig chromosome | chr4 |
Pig SNP position | 106097200 |
PubMed ID | 25574825 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25574825 |
Study | Genome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms. |
Disease/Trait | Inflammatory skin disease |
Initial sample | 2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls |
Replication sample | NA |
Region | 1q21.3 |
Chromosome id | chr1 |
Chromosome position | 152189630 |
Reported gene | FLG-AS1 |
Mapped gene | RPTN - HRNR |
Upstream gene id | 126638 |
Downstream gene id | 388697 |
SNP gene ids | |
Upstream gene distance | 30402 |
Downstream gene distance | 22446 |
SNP risk allele | rs12130219-? |
SNPs | rs12130219 |
Merged | 0 |
SNP id current | 12130219 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 1E-23 |
Pvalue mlog | 23 |
P value text | (Opposed) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 5200000] |
CNV | N |
Mapped trait | atopic eczema, psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000274, http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002740 |