SNP Detail For rs12120588
1.Mapping Information
Human SNP ID rs12120588
Human chromosome chr1
Human SNP position 217741047
Pig chromosome chr10
Pig SNP position 9926599
2.Annotation Information
PubMed ID25811787
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25811787
StudyModulation of Genetic Associations with Serum Urate Levels by Body-Mass-Index in Humans.
Disease/TraitUrate levels in overweight individuals
Initial sampleup to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals
Replication sampleNA
Region1q41
Chromosome idchr1
Chromosome position217741047
Reported geneSPATA17
Mapped geneSPATA17
Upstream gene id
Downstream gene id
SNP gene ids128153
Upstream gene distance
Downstream gene distance
SNP risk allelers12120588-T
SNPsrs12120588
Merged0
SNP id current12120588
Contextintron_variant
Intergenic0
Allele frequency0.42
P value0.000006
Pvalue mlog5.22184874961635
P value text(women)
Or beta0.077
%95 Ci[0.044-0.11] kg/m2 decrease
PlatformAffymetrix, Illumina [at least 188473] (imputed)
CNVN
Mapped traiturate measurement, overweight body mass index status
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004531, http://www.ebi.ac.uk/efo/EFO_0005935
Study accessionGCST002829