SNP Detail For rs12105421
1.Mapping Information
Human SNP ID rs12105421
Human chromosome chr2
Human SNP position 102959630
Pig chromosome chr3
Pig SNP position 53706642
2.Annotation Information
PubMed ID24132900
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24132900
StudyGenome-wide association study of atypical psychosis.
Disease/TraitPsychosis (atypical)
Initial sample47 Japanese ancestry cases, 882 Japanese ancestry controls
Replication sampleNA
Region2q12.1
Chromosome idchr2
Chromosome position102959630
Reported geneintergenic
Mapped geneLOC105373518 - LOC105373519
Upstream gene id105373518
Downstream gene id105373519
SNP gene ids
Upstream gene distance63879
Downstream gene distance7778
SNP risk allelers12105421-?
SNPsrs12105421
Merged0
SNP id current12105421
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta
%95 Ci
PlatformAffymetrix [545513]
CNVN
Mapped traitpsychosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005407
Study accessionGCST002211