Human SNP ID | rs12105421 |
---|---|
Human chromosome | chr2 |
Human SNP position | 102959630 |
Pig chromosome | chr3 |
Pig SNP position | 53706642 |
PubMed ID | 24132900 |
---|---|
Journal | Am J Med Genet B Neuropsychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24132900 |
Study | Genome-wide association study of atypical psychosis. |
Disease/Trait | Psychosis (atypical) |
Initial sample | 47 Japanese ancestry cases, 882 Japanese ancestry controls |
Replication sample | NA |
Region | 2q12.1 |
Chromosome id | chr2 |
Chromosome position | 102959630 |
Reported gene | intergenic |
Mapped gene | LOC105373518 - LOC105373519 |
Upstream gene id | 105373518 |
Downstream gene id | 105373519 |
SNP gene ids | |
Upstream gene distance | 63879 |
Downstream gene distance | 7778 |
SNP risk allele | rs12105421-? |
SNPs | rs12105421 |
Merged | 0 |
SNP id current | 12105421 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [545513] |
CNV | N |
Mapped trait | psychosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005407 |
Study accession | GCST002211 |