Human SNP ID | rs1209523 |
---|---|
Human chromosome | chr20 |
Human SNP position | 22587304 |
Pig chromosome | chr17 |
Pig SNP position | 34059509 |
PubMed ID | 20152958 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20152958 |
Study | A weighted false discovery rate control procedure reveals alleles at FOXA2 that influence fasting glucose levels. |
Disease/Trait | Fasting plasma glucose |
Initial sample | 2,029 African American individuals, 7,428 European ancestry individuals |
Replication sample | 1,571 African American individuals, 3,825 European ancestry individuals |
Region | 20p11.21 |
Chromosome id | chr20 |
Chromosome position | 22587304 |
Reported gene | FOXA2 |
Mapped gene | FOXA2 - LINC01384 |
Upstream gene id | 3170 |
Downstream gene id | 101929685 |
SNP gene ids | |
Upstream gene distance | 1841 |
Downstream gene distance | 218 |
SNP risk allele | rs1209523-? |
SNPs | rs1209523 |
Merged | 0 |
SNP id current | 1209523 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.043 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [814004] |
CNV | N |
Mapped trait | fasting blood glucose measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004465 |
Study accession | GCST000591 |