SNP Detail For rs1209523
1.Mapping Information
Human SNP ID rs1209523
Human chromosome chr20
Human SNP position 22587304
Pig chromosome chr17
Pig SNP position 34059509
2.Annotation Information
PubMed ID20152958
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20152958
StudyA weighted false discovery rate control procedure reveals alleles at FOXA2 that influence fasting glucose levels.
Disease/TraitFasting plasma glucose
Initial sample2,029 African American individuals, 7,428 European ancestry individuals
Replication sample1,571 African American individuals, 3,825 European ancestry individuals
Region20p11.21
Chromosome idchr20
Chromosome position22587304
Reported geneFOXA2
Mapped geneFOXA2 - LINC01384
Upstream gene id3170
Downstream gene id101929685
SNP gene ids
Upstream gene distance1841
Downstream gene distance218
SNP risk allelers1209523-?
SNPsrs1209523
Merged0
SNP id current1209523
Contextupstream_gene_variant
Intergenic1
Allele frequency0.043
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta
%95 Ci
PlatformAffymetrix [814004]
CNVN
Mapped traitfasting blood glucose measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004465
Study accessionGCST000591