Human SNP ID | rs12091709 |
---|---|
Human chromosome | chr1 |
Human SNP position | 89878392 |
Pig chromosome | chr4 |
Pig SNP position | 138860981 |
PubMed ID | 25644384 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25644384 |
Study | Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53鈥?49). |
Disease/Trait | Cognitive function |
Initial sample | 51,719 European ancestry individuals 1,473 Erasmus Rupchen Family individuals, 327 Korculan individuals, 430 Orcadian individuals |
Replication sample | NA |
Region | 1p22.2 |
Chromosome id | chr1 |
Chromosome position | 89878392 |
Reported gene | LRRC8D |
Mapped gene | LRRC8D |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55144 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12091709-? |
SNPs | rs12091709 |
Merged | 0 |
SNP id current | 12091709 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.1154 |
%95 Ci | [0.067-0.164] unit decrease |
Platform | Affymetrix, Illumina [2478500] (imputed) |
CNV | N |
Mapped trait | cognition |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003925 |
Study accession | GCST002774 |