SNP Detail For rs12091709
1.Mapping Information
Human SNP ID rs12091709
Human chromosome chr1
Human SNP position 89878392
Pig chromosome chr4
Pig SNP position 138860981
2.Annotation Information
PubMed ID25644384
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25644384
StudyGenetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53鈥?49).
Disease/TraitCognitive function
Initial sample51,719 European ancestry individuals 1,473 Erasmus Rupchen Family individuals, 327 Korculan individuals, 430 Orcadian individuals
Replication sampleNA
Region1p22.2
Chromosome idchr1
Chromosome position89878392
Reported geneLRRC8D
Mapped geneLRRC8D
Upstream gene id
Downstream gene id
SNP gene ids55144
Upstream gene distance
Downstream gene distance
SNP risk allelers12091709-?
SNPsrs12091709
Merged0
SNP id current12091709
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.1154
%95 Ci[0.067-0.164] unit decrease
PlatformAffymetrix, Illumina [2478500] (imputed)
CNVN
Mapped traitcognition
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003925
Study accessionGCST002774