SNP Detail For rs1207393
1.Mapping Information
Human SNP ID rs1207393
Human chromosome chr22
Human SNP position 26257396
Pig chromosome chr14
Pig SNP position 46768344
2.Annotation Information
PubMed ID22837378
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22837378
StudyGenome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.
Disease/TraitAirflow obstruction
Initial sampleup to 3,368 European ancestry cases, up to 29,507 European ancestry controls
Replication sample331 European ancestry cases, 2,550 European ancestry controls
Region22q12.1
Chromosome idchr22
Chromosome position26257396
Reported geneSEZ6L
Mapped geneSEZ6L
Upstream gene id
Downstream gene id
SNP gene ids23544
Upstream gene distance
Downstream gene distance
SNP risk allelers1207393-?
SNPsrs1207393
Merged0
SNP id current1207393
Contextintron_variant
Intergenic0
Allele frequency0.64
P value0.000005
Pvalue mlog5.30102999566398
P value text(FEV1 65%)
Or beta1.19
%95 Ci
PlatformAffymetrix, Illumina [up to 2500000] (imputed)
CNVN
Mapped traitpulmonary function measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003892
Study accessionGCST001621