SNP Detail For rs12073359
1.Mapping Information
Human SNP ID rs12073359
Human chromosome chr1
Human SNP position 150036820
Pig chromosome chr4
Pig SNP position 108297668
2.Annotation Information
PubMed ID25963547
JournalCancer
Linkwww.ncbi.nlm.nih.gov/pubmed/25963547
StudyGenetic and clinical factors associated with obesity among adult survivors of childhood cancer: A report from the St. Jude Lifetime Cohort.
Disease/TraitObesity in adult survivors of childhood cancer not exposed to cranial radiation
Initial sample359 obese individuals, 861 non-obese individuals
Replication sampleNA
Region1q21.2
Chromosome idchr1
Chromosome position150036820
Reported geneVPS45
Mapped geneLOC105371431
Upstream gene id
Downstream gene id
SNP gene ids105371431
Upstream gene distance
Downstream gene distance
SNP risk allelers12073359-?
SNPsrs12073359
Merged0
SNP id current12073359
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.7
%95 Ci(1.4-2.1)
PlatformAffymetrix [NR] (imputed)
CNVN
Mapped traitchildhood cancer, obesity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1000654, http://www.ebi.ac.uk/efo/EFO_0001073
Study accessionGCST002904