Human SNP ID | rs12073359 |
---|---|
Human chromosome | chr1 |
Human SNP position | 150036820 |
Pig chromosome | chr4 |
Pig SNP position | 108297668 |
PubMed ID | 25963547 |
---|---|
Journal | Cancer |
Link | www.ncbi.nlm.nih.gov/pubmed/25963547 |
Study | Genetic and clinical factors associated with obesity among adult survivors of childhood cancer: A report from the St. Jude Lifetime Cohort. |
Disease/Trait | Obesity in adult survivors of childhood cancer not exposed to cranial radiation |
Initial sample | 359 obese individuals, 861 non-obese individuals |
Replication sample | NA |
Region | 1q21.2 |
Chromosome id | chr1 |
Chromosome position | 150036820 |
Reported gene | VPS45 |
Mapped gene | LOC105371431 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371431 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12073359-? |
SNPs | rs12073359 |
Merged | 0 |
SNP id current | 12073359 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.7 |
%95 Ci | (1.4-2.1) |
Platform | Affymetrix [NR] (imputed) |
CNV | N |
Mapped trait | childhood cancer, obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1000654, http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST002904 |