SNP Detail For rs12053254
1.Mapping Information
Human SNP ID rs12053254
Human chromosome chr2
Human SNP position 189742427
Pig chromosome chr15
Pig SNP position 105367744
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2q32.2
Chromosome idchr2
Chromosome position189742427
Reported geneANKAR, PMS1
Mapped geneANKAR
Upstream gene id
Downstream gene id
SNP gene ids150709
Upstream gene distance
Downstream gene distance
SNP risk allelers12053254-G
SNPsrs12053254
Merged0
SNP id current12053254
Contextintron_variant
Intergenic0
Allele frequency0.125
P value0.000006
Pvalue mlog5.22184874961635
P value text(Diet carbohydrate )
Or beta0.03
%95 Ci[NR] g/d increase
PlatformIllumina [899892]
CNVN
Mapped traitenergy intake
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003939
Study accessionGCST001762