SNP Detail For rs12050161
1.Mapping Information
Human SNP ID rs12050161
Human chromosome chr14
Human SNP position 68893914
Pig chromosome chr7
Pig SNP position 98890648
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (Mean PAL)
Initial sampleup to 4,032 European ancestry individuals
Replication sampleNA
Region14q24.1
Chromosome idchr14
Chromosome position68893914
Reported geneACTN1
Mapped geneACTN1
Upstream gene id
Downstream gene id
SNP gene ids87
Upstream gene distance
Downstream gene distance
SNP risk allelers12050161-T
SNPsrs12050161
Merged0
SNP id current12050161
Contextintron_variant
Intergenic0
Allele frequency0.84
P value0.000004
Pvalue mlog5.39794000867203
P value text(Age 20-60 years)
Or beta0.07
%95 Ci[0.040-0.100] unit increase
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002127