SNP Detail For rs1204798
1.Mapping Information
Human SNP ID rs1204798
Human chromosome chr6
Human SNP position 116222684
Pig chromosome chr1
Pig SNP position 91972443
2.Annotation Information
PubMed ID23064961
JournalJ Dent Res
Linkwww.ncbi.nlm.nih.gov/pubmed/23064961
StudyGWAS of dental caries patterns in the permanent dentition.
Disease/TraitDental caries
Initial sample920 European ancestry individuals
Replication sampleNA
Region6q22.1
Chromosome idchr6
Chromosome position116222684
Reported geneNT5DC1
Mapped geneNT5DC1
Upstream gene id
Downstream gene id
SNP gene ids221294
Upstream gene distance
Downstream gene distance
SNP risk allelers1204798-?
SNPsrs1204798
Merged0
SNP id current1204798
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(DMFS2)
Or beta
%95 Ci
PlatformIllumina [518997]
CNVN
Mapped traitdental caries
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003819
Study accessionGCST001713