Human SNP ID | rs12046117 |
---|---|
Human chromosome | chr1 |
Human SNP position | 117208743 |
Pig chromosome | chr4 |
Pig SNP position | 113475169 |
PubMed ID | 19116933 |
---|---|
Journal | Arthritis Rheum |
Link | www.ncbi.nlm.nih.gov/pubmed/19116933 |
Study | Identification of a novel susceptibility locus for juvenile idiopathic arthritis by genome-wide association analysis. |
Disease/Trait | Arthritis (juvenile idiopathic) |
Initial sample | 279 European ancestry cases, 184 European ancestry controls |
Replication sample | up to 654 European ancestry cases, 2,024 European ancestry controls |
Region | 1p12 |
Chromosome id | chr1 |
Chromosome position | 117208743 |
Reported gene | VTCN1 |
Mapped gene | VTCN1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 79679 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12046117-? |
SNPs | rs12046117 |
Merged | 0 |
SNP id current | 12046117 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.09 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.58 |
%95 Ci | [1.29-1.94] |
Platform | Affymetrix [88862] |
CNV | N |
Mapped trait | chronic childhood arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002609 |
Study accession | GCST000309 |