SNP Detail For rs12046117
1.Mapping Information
Human SNP ID rs12046117
Human chromosome chr1
Human SNP position 117208743
Pig chromosome chr4
Pig SNP position 113475169
2.Annotation Information
PubMed ID19116933
JournalArthritis Rheum
Linkwww.ncbi.nlm.nih.gov/pubmed/19116933
StudyIdentification of a novel susceptibility locus for juvenile idiopathic arthritis by genome-wide association analysis.
Disease/TraitArthritis (juvenile idiopathic)
Initial sample279 European ancestry cases, 184 European ancestry controls
Replication sampleup to 654 European ancestry cases, 2,024 European ancestry controls
Region1p12
Chromosome idchr1
Chromosome position117208743
Reported geneVTCN1
Mapped geneVTCN1
Upstream gene id
Downstream gene id
SNP gene ids79679
Upstream gene distance
Downstream gene distance
SNP risk allelers12046117-?
SNPsrs12046117
Merged0
SNP id current12046117
Contextintron_variant
Intergenic0
Allele frequency0.09
P value0.000001
Pvalue mlog6
P value text
Or beta1.58
%95 Ci[1.29-1.94]
PlatformAffymetrix [88862]
CNVN
Mapped traitchronic childhood arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002609
Study accessionGCST000309