SNP Detail For rs12042319
1.Mapping Information
Human SNP ID rs12042319
Human chromosome chr1
Human SNP position 62584148
Pig chromosome chr6
Pig SNP position 138128038
2.Annotation Information
PubMed ID26582766
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26582766
StudyGenetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.
Disease/TraitTriglycerides
Initial sample8,344 Han Chinese ancestry individuals
Replication sample14,739 Han Chinese ancestry individuals
Region1p31.3
Chromosome idchr1
Chromosome position62584148
Reported geneANGPTL3
Mapped geneDOCK7
Upstream gene id
Downstream gene id
SNP gene ids85440
Upstream gene distance
Downstream gene distance
SNP risk allelers12042319-G
SNPsrs12042319
Merged
SNP id current12042319
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.81
P value0.000000000008
Pvalue mlog11.096910013008
P value text
Or beta0.02
%95 Ci[0.014-0.026] unit increase
PlatformAffymetrix, Illumina [2573667] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST003217
PubMed ID26582766
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26582766
StudyGenetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.
Disease/TraitCholesterol, total
Initial sample8,344 Han Chinese ancestry individuals
Replication sample14,739 Han Chinese ancestry individuals
Region1p31.3
Chromosome idchr1
Chromosome position62584148
Reported geneANGPTL3
Mapped geneDOCK7
Upstream gene id
Downstream gene id
SNP gene ids85440
Upstream gene distance
Downstream gene distance
SNP risk allelers12042319-G
SNPsrs12042319
Merged
SNP id current12042319
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.81
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta2.229
%95 Ci[1.44-3.02] unit increase
PlatformAffymetrix, Illumina [2573667] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST003214