SNP Detail For rs12039519
1.Mapping Information
Human SNP ID rs12039519
Human chromosome chr1
Human SNP position 161983610
Pig chromosome chr4
Pig SNP position 96500333
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitParasitemia in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region1q23.3
Chromosome idchr1
Chromosome position161983610
Reported geneNR
Mapped geneOLFML2B
Upstream gene id
Downstream gene id
SNP gene ids25903
Upstream gene distance
Downstream gene distance
SNP risk allelers12039519-?
SNPsrs12039519
Merged0
SNP id current12039519
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitparasitemia measurement, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005528, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002282