SNP Detail For rs12037343
1.Mapping Information
Human SNP ID rs12037343
Human chromosome chr1
Human SNP position 218758563
Pig chromosome chr10
Pig SNP position 10680334
2.Annotation Information
PubMed ID24556642
JournalCaries Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24556642
StudyGenome-wide association study of primary dentition pit-and-fissure and smooth surface caries.
Disease/TraitSmooth-surface caries
Initial sample1006 European ancestry individuals
Replication sampleNA
Region1q41
Chromosome idchr1
Chromosome position218758563
Reported geneLOC643723
Mapped geneLOC105372924 - NXNP1
Upstream gene id105372924
Downstream gene id100130251
SNP gene ids
Upstream gene distance37941
Downstream gene distance85199
SNP risk allelers12037343-T
SNPsrs12037343
Merged0
SNP id current12037343
Contextintergenic_variant
Intergenic1
Allele frequency0.0609
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta2.2172
%95 Ci[NR] unit increase
PlatformIllumina [1216189] (imputed)
CNVN
Mapped traitsmooth surface dental caries
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006339
Study accessionGCST002361