Human SNP ID | rs12037343 |
---|---|
Human chromosome | chr1 |
Human SNP position | 218758563 |
Pig chromosome | chr10 |
Pig SNP position | 10680334 |
PubMed ID | 24556642 |
---|---|
Journal | Caries Res |
Link | www.ncbi.nlm.nih.gov/pubmed/24556642 |
Study | Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. |
Disease/Trait | Smooth-surface caries |
Initial sample | 1006 European ancestry individuals |
Replication sample | NA |
Region | 1q41 |
Chromosome id | chr1 |
Chromosome position | 218758563 |
Reported gene | LOC643723 |
Mapped gene | LOC105372924 - NXNP1 |
Upstream gene id | 105372924 |
Downstream gene id | 100130251 |
SNP gene ids | |
Upstream gene distance | 37941 |
Downstream gene distance | 85199 |
SNP risk allele | rs12037343-T |
SNPs | rs12037343 |
Merged | 0 |
SNP id current | 12037343 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.0609 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 2.2172 |
%95 Ci | [NR] unit increase |
Platform | Illumina [1216189] (imputed) |
CNV | N |
Mapped trait | smooth surface dental caries |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006339 |
Study accession | GCST002361 |